Research Interests:
AI/ML for computational biology
Spatial omics
Agentic discovery of spatial biology insights
Contact me:
zqwu (at) cs.hku.hk
zhenqin (at) enablemedicine.com
Hi! I'm an Assistant Professor in the Department of AI & Data Science, School of Computing and Data Science at the University of Hong Kong. My research focuses on developing artificial intelligence (AI), deep learning, and LLM-powered agentic tools for modeling and interpreting spatial biology, including spatial proteomics, transcriptomics, and histopathological imaging (a nice review article here).
I serve as a scientific advisor to Enable Medicine, a biotechnology start-up based in Menlo Park, California specializing in CODEX and other spatial omics experiments and data analysis. Besides, I am also an advisor to Strand AI, a start-up building multimodal foundation models for patient biology data.
I am seeking enthusiastic PhD candidates and postdoctoral researchers to join my journey. Feel free to reach out if you are interested!
I obtained my Ph.D. at Stanford University, advised by Prof. James Zou and Dr. Vijay Pande, during which I worked on deep learning/machine learning applications in various fields of computational biology (Thesis). Before that, I was at Peking University, where I completed my B.Sc. in Chemistry, advised by Prof. Xinsheng Zhao.
My general research interests focus on deep learning and machine learning applications in biology and chemistry. I am especially interested in leveraging spatial omics data to answer the following questions:
How are diverse cells spatially organized in both normal and dysfunctional tissues?
How to identify specific spatial structures that correlate with disease states and prognosis?
How to simplify and automate complex data analysis pipelines for spatial omics?
When not coding or sleeping, you will most likely find me on a badminton court - jumping around and catching my breath. I was a long-term member of the bass section of Sing++ (an acapella at Stanford, follow us!). Oh, and just to clarify, even though I majored in chemistry for over a decade, don't expect to see me in any wet labs. I practice my chemistry lab skills in my kitchen, dealing with soy sauce and oyster sauce.